AT1G16560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.616 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Per1-like family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 343 Blast hits to 337 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 158; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5668945..5670343 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39376.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVHYWTALF LLLPCLFCIS NASAGDADPD YRTCVSECEI SGCVGQLCFP QCNSSSDGGP WYIQEPLYLQ WKKWGCQGDC RYQCMVNRET ERETLGQAPV 101: KYHGKWPFKR VLGIQEPASV AFSVLNLAMH FHGWLSFFIM IYYKLPLKQD RTAYYEYVGL WHIYGLLSMN SWFWSAVFHS RDVDLTERLD YSSAVAILGF 201: SLILAILRTF DIRVEAARVM VSAPILAFVT THILYINFYK LDYGWNMIVC VAMGVSQLFL WARWAAVSSH PSNWKLWVVV IAGGLAMLLE IYDFPPYEGY 301: FDAHSIWHAA TIPLTILWWS FIRDDAEFRT SSLLKKTKTK AK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)