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AT1G16530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ASYMMETRIC LEAVES 2-like 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ASYMMETRIC LEAVES 2-like 9 (ASL9); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT2G30130.1); Has 986 Blast hits to 981 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:23463DNASU:838223eggNOG:ENOG410IZA1eggNOG:ENOG410YHFG
EMBL:AB473842EMBL:AC006341EMBL:CP002684EnsemblPlants:AT1G16530
EnsemblPlants:AT1G16530.1entrez:838223GeneID:838223Genevisible:Q9SA51
GO:GO:0005634Gramene:AT1G16530.1hmmpanther:PTHR31301hmmpanther:PTHR31301:SF7
HOGENOM:HOG000237548InParanoid:Q9SA51InterPro:IPR004883KEGG:ath:AT1G16530
MINT:MINT-8067509ncoils:CoilOMA:NHRSDAVPaxDb:Q9SA51
Pfam:PF03195Pfam:Q9SA51Pfscan:PS50891PhylomeDB:Q9SA51
PRO:PR:Q9SA51PROSITE:PS50891ProteinModelPortal:Q9SA51Proteomes:UP000006548
RefSeq:NP_173102.1STRING:3702.AT1G16530.1TAIR:AT1G16530tair10-symbols:ASL9
tair10-symbols:LBD3UniGene:At.49305UniProt:Q9SA51
Coordinates (TAIR10) chr1:-:5651470..5652839
Molecular Weight (calculated) 18638.30 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.34
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MRQKGHRHGR TVSPCAGCKL LRRKCVKDSC VFAPYFPAKE PYKFAIVHKI FGASNVNKML QELSENHRSD AVDSMVYEAN ARIQDPVYGC VGTISSLHRQ
101: LETLQTQLAF AQAELIHIRT LHRIHTKPPP YTASTVTFPS NKDFYSDIDM AVAYTDDAGD FLWSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)