AT1G16480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.873 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 59612 Blast hits to 13645 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 112; Fungi - 34; Plants - 58832; Viruses - 0; Other Eukaryotes - 630 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5625843..5628656 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 104034.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 937 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYTKFGRVKP ARHLFDIMPV RNEVSWNTMM SGIVRVGLYL EGMEFFRKMC DLGIKPSSFV IASLVTACGR SGSMFREGVQ VHGFVAKSGL LSDVYVSTAI 101: LHLYGVYGLV SCSRKVFEEM PDRNVVSWTS LMVGYSDKGE PEEVIDIYKG MRGEGVGCNE NSMSLVISSC GLLKDESLGR QIIGQVVKSG LESKLAVENS 201: LISMLGSMGN VDYANYIFDQ MSERDTISWN SIAAAYAQNG HIEESFRIFS LMRRFHDEVN STTVSTLLSV LGHVDHQKWG RGIHGLVVKM GFDSVVCVCN 301: TLLRMYAGAG RSVEANLVFK QMPTKDLISW NSLMASFVND GRSLDALGLL CSMISSGKSV NYVTFTSALA ACFTPDFFEK GRILHGLVVV SGLFYNQIIG 401: NALVSMYGKI GEMSESRRVL LQMPRRDVVA WNALIGGYAE DEDPDKALAA FQTMRVEGVS SNYITVVSVL SACLLPGDLL ERGKPLHAYI VSAGFESDEH 501: VKNSLITMYA KCGDLSSSQD LFNGLDNRNI ITWNAMLAAN AHHGHGEEVL KLVSKMRSFG VSLDQFSFSE GLSAAAKLAV LEEGQQLHGL AVKLGFEHDS 601: FIFNAAADMY SKCGEIGEVV KMLPPSVNRS LPSWNILISA LGRHGYFEEV CATFHEMLEM GIKPGHVTFV SLLTACSHGG LVDKGLAYYD MIARDFGLEP 701: AIEHCICVID LLGRSGRLAE AETFISKMPM KPNDLVWRSL LASCKIHGNL DRGRKAAENL SKLEPEDDSV YVLSSNMFAT TGRWEDVENV RKQMGFKNIK 801: KKQACSWVKL KDKVSSFGIG DRTHPQTMEI YAKLEDIKKL IKESGYVADT SQALQDTDEE QKEHNLWNHS ERLALAYALM STPEGSTVRI FKNLRICSDC 901: HSVYKFVSRV IGRRIVLRDQ YRFHHFERGL CSCKDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)