AT1G16180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.679 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1); Has 780 Blast hits to 770 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 127; Plants - 141; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5540905..5542670 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45957.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.58 | ||||||||||||||||||||||||||||||||
| Length | 412 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFAASCLASC CAACACDACR TVVSGISRRS ARIAYCGLFA LSLIVSWILR EVAAPLMEKL PWINHFHKTP DREWFETDAV LRVSLGNFLF FSILSVMMIG 101: VKNQKDPRDG IHHGGWMMKI ICWCILVIFM FFLPNEIISF YESMSKFGAG FFLLVQVVLL LDFVHGWNDT WVGYDEQFWY AALLVVSLVC YLATFVFSGF 201: LFHWFTPSGH DCGLNTFFII MTLIFVFVFA IVVLHPTVGG SILPASVISL YCMYLCYSGL ASEPRDYECN GLHNHSKAVS TGTMTIGLLT TVLSVVYSAV 301: RAGSSTTLLS PPDSPRAEKP LLPIDGKAEE KEEKENKKPV SYSYAFFHII FSLASMYSAM LLTGWSTSVG ESGKLVDVGW PSVWVRVVTS WATAGLFIWS 401: LVAPILFPDR EF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)