AT1G16020.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.751 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1712) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 187 Blast hits to 185 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:5498633..5501018 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57843.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 515 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASMSSGDES LRLCMFDLRR GQTEGQELEK ILFFYPADLD FSTQLSVIGL SEGLITFTRL FSPEAACEVI EAERHSHVFY EAEPDIWMVM VVEKNKETGA 101: IWRIDALRRV LKEVHSLFVM FHGSIRALIE KEPTGGLTRS LLYPFITDYL STFQIWSLSE DCCCEFFVGK KLQLPTFRET LRERGTVQML TLARDTAVEV 201: QSLVQVLDSC AGSLRCHSMI LFQDLLVSTT LSADDTVDLF TFAVMRLTSK ALSSDTSSWS YLRKGPGSSE ISSRSNLAPV GSIDSLHSRN GNNMHHVIRP 301: LQNDKWTKGK DGFLITDIWG LETGGSPDSA IPTIWLQQTQ ERMYLLAYQH KSLTLLLLMP TNAIVNGDLS ISAVKQQVIE DASLRILKIE ENISRGWGGE 401: NAYHIKGYRY LVVDNDTKVS RSSPSGKVTT LAKESLLALN KLREEVDSEK SRAKGQEKDM EICIRAKNNV WVIARVTRGK ELYMALEKGS DTLLDTTDAV 501: GRFSNRYCSG AFLMD |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)