AT1G15990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cyclic nucleotide gated channel 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cyclic nucleotide gated channel 7 (CNGC7); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 8 (TAIR:AT1G19780.1); Has 3586 Blast hits to 3408 proteins in 277 species: Archae - 0; Bacteria - 66; Metazoa - 1555; Fungi - 86; Plants - 1001; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5491304..5493772 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81390.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 709 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMQRNCFGF NLKNRGGEKK KASKSFREGV KKIRSEGLIT IGKSVTRAVF PEDLRITEKK IFDPQDKTLL VWNRLFVISC ILAVSVDPLF FYLPIVDNSG 101: SSCIGIDTKL AVTTTTLRTI VDVFYLTRMA LQFRTAYIAP SSRVFGRGEL VIDPAKIAER YLTRYFVVDF LAVLPLPQIA VWKFLHGSKG SDVLPTKTAL 201: LNIVIVQYIP RFVRFIPLTS ELKKTAGAFA EGAWAGAAYY LLWYMLASHI TGAFWYMLSV ERNDTCWRFA CKVQPDPRLC VQILYCGTKF VSSGETEWIK 301: TVPELLKSNC SAKADDSKFN YGIYGQAISS GIVSSTTFFS KFCYCLWWGL QNLSTLGQGL QTSTFPGEVL FSIAIAIAGL LLFALLIGNM QTYLQSLTVR 401: LEEMRIKRRD SEQWMHHRSL PQNLRERVRR YDQYKWLETR GVDEENIVQS LPKDLRRDIK RHLCLNLVRR VPLFANMDER LLDAICERLK PSLFTESTYI 501: VREGDPVNEM MFIIRGRLES VTTDGGRSGF FNRGLLKEGD FCGEELLTWA LDPKAGSNLP SSTRTVKALT EVEAFALEAE ELKFVASQFR RLHSRQVQQT 601: FRFYSQQWRT WASCFIQAAW RRYSRRKNAE LRRIEEKEEE LGYEDEYDDE SDKRPMVITR SESSSRLRST IFASRFAANA LKGHRLRSSE SSKTLINLQK 701: PPEPDFDAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)