AT1G14800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.487 peroxisome 0.420 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G35280.1); Has 210 Blast hits to 208 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5099572..5102558 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43580.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.60 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEVDVVAIP SKANYVAFDA LRLGRSTQQV VGRLLRFWDA RNIKKDGQFM GIVLLLLDEK CSVIHAFIPA ALASHFRQVL REGIIFNVSG FEVGRCTKLY 101: KITDHPFLLR FLPATTIIEV SDVGPTIERE KFMLRNFDNL QALANTNIEL PGQITFVQGS NLNDPTSTQR LVLRYRIDSS VIVYLSLWDD VAATFRAHLS 201: SGRAEELEGE LISLRTSRGA RERAEELEDF ILDLGRAKMR GAIHPPTCPM ELSVFFFPRS SNINSYSLKA NDERVLKTLN LAPLVKKPLS CRKHHLIMKK 301: CLANNNPDAH YIKGIIWYFN LDHCDVGLHH IGIAANGGQK EAIYIPVVFG EINQVGTDSN RKIAKRFKRV HDEFRFKRQL YESK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)