AT1G14710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT4G02940.1); Has 6006 Blast hits to 3456 proteins in 374 species: Archae - 2; Bacteria - 410; Metazoa - 1957; Fungi - 511; Plants - 1958; Viruses - 385; Other Eukaryotes - 783 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5062168..5064697 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66207.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||
| Length | 601 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMPPPGNVT TPSEKLQFPP PANWIPDERD GFISWLRAEF AAANAIIDSL CQHLQAVGDH NEYESVIGSI HHRRLAWSQV LTMQQFFPVA DVSYNLQQIA 101: WKRQQQMPPQ RHYNSDQVGK FGARRSGPGF NKHHGGGGGY RGADSMARNG HNFNGVNSDR VEHREEAKLA SDVKALSVAE EKRDGSEKPR SDSKVEKKLE 201: ESETQEEIVK NHKCNSGSKD NSLISEQKQE ENDKECPASM AKTFVVQEMY DAKMVNVVEG LKLYDKMLDA NEVSQLVSLV TNLRLAGRRG QLQSEAYVGY 301: KRPNRGHGRE MIQLGLPIAD TPPDDDSIKD RRIEPIPSAL SDIIERLVSK QIIPVKPDAC IIDFFSEGDH SQPHMFVPWF GRPISVLSLS ECDYTFGRVI 401: VSENPGDYKG SLKLSLTPGS VLLVEGKSAN LAKYAIHATR KQRILISFIK SKPRNSNWGP PPSRSPNQHI RHPTGPPKHY PVVIPSTGVL PTPSHRPPNG 501: AVQPIFIPPS PPLASPMPFP GGVPTGPPVW PLLPPHPRHQ TAPQPRMPIP GTGVFLPPGS NQELADNSNG TEGKLDLKAK EEARNGFGEG ECDGSNGKQS 601: N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)