AT1G14470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.542 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 45588 Blast hits to 14013 proteins in 255 species: Archae - 1; Bacteria - 22; Metazoa - 282; Fungi - 244; Plants - 44188; Viruses - 0; Other Eukaryotes - 851 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4954080..4955702 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61745.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 540 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRELTVSLA AIASQALTFP QLNQIHAQLI VFNSLPRQSY WASRIISCCT RLRAPSYYTR LIFDSVTFPN VFVVNSMFKY FSKMDMANDV LRLYEQRSRC 101: GIMPDAFSFP VVIKSAGRFG ILFQALVEKL GFFKDPYVRN VIMDMYVKHE SVESARKVFD QISQRKGSDW NVMISGYWKW GNKEEACKLF DMMPENDVVS 201: WTVMITGFAK VKDLENARKY FDRMPEKSVV SWNAMLSGYA QNGFTEDALR LFNDMLRLGV RPNETTWVIV ISACSFRADP SLTRSLVKLI DEKRVRLNCF 301: VKTALLDMHA KCRDIQSARR IFNELGTQRN LVTWNAMISG YTRIGDMSSA RQLFDTMPKR NVVSWNSLIA GYAHNGQAAL AIEFFEDMID YGDSKPDEVT 401: MISVLSACGH MADLELGDCI VDYIRKNQIK LNDSGYRSLI FMYARGGNLW EAKRVFDEMK ERDVVSYNTL FTAFAANGDG VETLNLLSKM KDEGIEPDRV 501: TYTSVLTACN RAGLLKEGQR IFKSIRNPLA DHYACMDLLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)