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AT1G14315.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.674
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G09650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:DQ652724EnsemblPlants:AT1G14315EnsemblPlants:AT1G14315.1entrez:6241224
Gene3D:2.120.10.80hmmpanther:PTHR32133HOGENOM:HOG000112508InterPro:IPR006527
InterPro:IPR011043InterPro:IPR015915InterPro:IPR017451PaxDb:A0MDV8
Pfam:PF07734SUPFAM:0047741SUPFAM:SSF50965TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniProt:A0MDV8
Coordinates (TAIR10) chr1:-:4886861..4887439
Molecular Weight (calculated) 21931.20 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.17
Length 192 amino acids
Sequence (TAIR10)
(BLAST)
001: MYNSSELGLE NATTCEVFDF STNTWRYINP SSPYRINTSS SRGHALYVDG SLYWLTGKKE IKVLALDLHT ETFQVISKAP FAEADHRNII TRSLNNRLCL
101: SVSKPLQQMI IWSFNSENKT WEQIYSIVNR SVTQSLPVAI LEKNKLLCCP RSNSRQLMIY DIKTKSVDSV SIGTYRCGDS VFCYFESLIS IL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)