AT1G14170.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.849 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding KH domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G15270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:4843463..4845253 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48915.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.10 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASTLRNIHD TVYRYLCPVK KTGSIIGKGG EIAKQIRSET KSNMRINEAL PGCEERVVTM YSTNEELNHF GDDGELVCPA LDALFKVHDM VVADADQDDG 101: TDDDNDLGEK QTVTVRMLVP SDQIGCVIGK GGQVIQNLRN DTNAQIRVIK DHLPACALTL SHDELLLIIG EPLVVREALY QVASLLHDNP SRFQHLLLSS 201: SSSSMHQPGA MLMSAALTSS HRNYAVRRDI ADAREFCVCF ICPAENVGGV IGKGGGFINQ IRQETGATIR VNTSETDDDD CIIFISSKEF YEDQSPAVNA 301: AIRLQQRCSE KVGKDANDLA ISTRLLVSSS QIGCLIGKGG AVISEMRSVT RANIRILQKE DVPKIAREDE EMVQITGSPD AAMKALTQVI LRLRANSFDM 401: DHGLVLLPTS FPYIPQVTES SSKSKYAKRD DHSKLNSNSK RRNHVS |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)