AT1G13960.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WRKY DNA-binding protein 4 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes WRKY DNA-binding protein 4 (WRKY4). | ||||||||||||
| Computational Description (TAIR10) |
WRKY DNA-binding protein 4 (WRKY4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 5891 Blast hits to 3196 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 6; Plants - 5778; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4776622..4779043 | ||||||||||||
| Molecular Weight (calculated) | 53053.20 Da | ||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||
| Length | 487 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD 101: VDPRFKQNRP TAVLDLICNI VQGSYGMTHQ QALAQVTAQA VQANANMQPQ TEYPPPSQVQ SFSSGQAQIP TSAPLPAQRE TSDVTIIEHR SQQPLNVDKP 201: ADDGYNWRKY GQKQVKGSEF PRSYYKCTNP GCPVKKKVER SLDGQVTEII YKGQHNHEPP QNTKRGNKDN TANINGSSIN NNRGSSELGA SQFQTNSSNK 301: TKREQHEAVS QATTTEHLSE ASDGEEVGNG ETDVREKDEN EPDPKRRSTE VRISEPAPAA SHRTVTEPRI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPY 401: PRSYYKCTTP GCGVRKHVER AATDPKAVVT TYEGKHNHDL PAAKSSSHAA AAAQLRPDNR PGGLANLNQQ QQQQPVARLR LKEEQTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)