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AT1G13680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK3KeggNOG:ENOG4111H2IEMBL:AC027656EMBL:CP002684
EnsemblPlants:AT1G13680EnsemblPlants:AT1G13680.1entrez:837929Gene3D:3.20.20.190
GeneID:837929GO:GO:0006629GO:GO:0008081Gramene:AT1G13680.1
hmmpanther:PTHR13593hmmpanther:PTHR13593:SF46HOGENOM:HOG000242533InterPro:IPR000909
InterPro:IPR017946KEGG:ath:AT1G13680OMA:MVNTCYGPfam:PF00388
Pfscan:PS50007PhylomeDB:Q9LMX9PIR:B86270PROSITE:PS50007
Proteomes:UP000006548RefSeq:NP_172824.3SUPFAM:SSF51695TAIR:AT1G13680
TMHMM:TMhelixUniGene:At.42015UniProt:Q9LMX9
Coordinates (TAIR10) chr1:+:4690409..4692702
Molecular Weight (calculated) 38791.00 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.10
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFKFFFAA IILVLFHPAA ITFVASYGSL QLGDQCSSDE DCNVGLGCFK CGIDVARCVR SNITDQFSIV NNSMPFNKYA FLTTHNSYAI EGKALHVATQ
101: EDTIVQQLNS GVRALMLDTY DYEGDVWFCH SFDEQCFEFT KFNRAIDTFK EIFAFLTANP SEIVTLILED YVKSQNGLTK VFTDSGLKKF WFPVQNMPIG
201: GQDWPLVKDM VANNHRLIVF TSAKSKQETE GIAYQWNYMV ENQYGDDGVK PDECSNRADS ALLTDKTKAL VSVNHFKTVP VKILTCEENS EQLLDMIKTC
301: YVAAGNRWAN FVAVNFYKRS NGGGTFQAID KLNGELLCGR DDVHAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)