suba logo
AT1G13245.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ROTUNDIFOLIA like 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ROTUNDIFOLIA like 17 (RTFL17); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 15 (TAIR:AT1G68825.2); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6YYeggNOG:ENOG4111687EMBL:AC007357EMBL:AF325098
EMBL:AK221719EMBL:AY085299EMBL:AY254320EMBL:BT025298
EMBL:CP002684EnsemblPlants:AT1G13245EnsemblPlants:AT1G13245.1entrez:837884
GeneID:837884GO:GO:0048367Gramene:AT1G13245.1hmmpanther:PTHR33102
hmmpanther:PTHR33102:SF10HOGENOM:HOG000142474InterPro:IPR012552KEGG:ath:AT1G13245
Pfam:PF08137PhylomeDB:Q9SAF8Proteomes:UP000006548RefSeq:NP_683303.1
STRING:3702.AT1G13245.1TAIR:AT1G13245tair10-symbols:DVL4tair10-symbols:RTFL17
UniGene:At.11267UniProt:Q9SAF8
Coordinates (TAIR10) chr1:-:4525852..4525977
Molecular Weight (calculated) 4719.10 Da
IEP (calculated) 11.29
GRAVY (calculated) -0.07
Length 41 amino acids
Sequence (TAIR10)
(BLAST)
1: MKMGGSKRRV SSKGLGAVLK EQRAKLYIIR RCVVMLLCWH D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)