AT1G13130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cellulase (glycosyl hydrolase family 5) protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT3G26140.1); Has 343 Blast hits to 335 proteins in 115 species: Archae - 2; Bacteria - 129; Metazoa - 0; Fungi - 78; Plants - 115; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4474726..4477820 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61550.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 552 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSKEPKHMF FIFPFFCFFF SFIAQNTVPN MSYPLSTSSR WIVDENGLRV KLVCANWPSH LQPVVAEGLS KQPVDAVAKK IVEMGFNCVR LTWPLDLMTN 101: ETLANNVTVR QSFQSLGLND DIVGFQTNNP SIIDLPLIEA YKTVVTTLGN NDVMVILDNH LTKPGWCCAN DDGNGFFGDQ FFDPTVWVAA LKKMAATFNG 201: VSNVVGMSLR NELRGPKQNV NDWFKYMQQG AEAVHSANNK VLVILSGLSF DADLSFVRSR PVKLSFTGKL VFELHWYSFS DGNSWAANNP NDICGRVLNR 301: IGNGGGYLLN QGFPLFLSEF GIDERGVNTN DNRYFGCLTG WAAENDVDWS LWALTGSYYL RQGKVGMNEY YGVLDSDWIS VRNSSFLQKI SFLQSPLQGP 401: GPRTDAYNLV FHPLTGLCIV RSLDDPKMLT LGPCNSSEPW SYTKKALRIK DQQLCLQSNG PKNPVTMTRT SCSTSGSKWQ TISASRMHLA STTSNKTSLC 501: LDVDTANNVV ANACKCLSKD KSCEPMSQWF KIIKATRPLK SSRLYKEISS ML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)