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AT1G12830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants - 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8E4eggNOG:ENOG4111C14EMBL:AC012187EMBL:CP002684
EnsemblPlants:AT1G12830EnsemblPlants:AT1G12830.1entrez:837839GeneID:837839
GO:GO:0005739GO:GO:0006122GO:GO:0008121Gramene:AT1G12830.1
hmmpanther:PTHR15336hmmpanther:PTHR15336:SF1HOGENOM:HOG000153068InterPro:IPR003422
KEGG:ath:AT1G12830ncoils:CoilOMA:VENQQDSPANTHER:PTHR15336
PhylomeDB:Q9LPW6PIR:G86261Proteomes:UP000006548RefSeq:NP_172743.1
STRING:3702.AT1G12830.1TAIR:AT1G12830UniGene:At.14929UniProt:Q9LPW6
Coordinates (TAIR10) chr1:-:4374412..4375053
Molecular Weight (calculated) 23615.20 Da
IEP (calculated) 3.56
GRAVY (calculated) -1.43
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVENQQDS SFPVKRKSDL FCQDQDNVTN KAQKLNPSLN SADSESKDGE TNGSGQIENL NSSTEETIGA ESSVLSEKAA EEVESGVIGD VGAEEEQEDE
101: EDEEEDDEEE EEEEEVVDRK GKGISREDKG KGKMIEVEES DDEDDSDDDE DDEGFDEDDE SDFSDDPLAE VDLDNILPSR TRRRSSQPGV FIPNEFSNRH
201: VNDEDDESSD SDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)