AT1G12210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.926 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RPS5-like 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RPS5-like 1 (RFL1); FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19; Bacteria - 1098; Metazoa - 2850; Fungi - 219; Plants - 13503; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4140948..4143605 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101450.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 885 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGCVSVSLS CDREVNQFSQ WLCVSGSYIQ NLSENLASLQ KAMGVLNAKR DDVQGRINRE EFTGHRRRLA QVQVWLTRIQ TIENQFNDLL STCNAEIQRL 101: CLCGFCSKNV KMSYLYGKRV IVLLREVEGL SSQGVFDIVT EAAPIAEVEE LPIQSTIVGQ DSMLDKVWNC LMEDKVWIVG LYGMGGVGKT TLLTQINNKF 201: SKLGGGFDVV IWVVVSKNAT VHKIQKSIGE KLGLVGKNWD EKNKNQRALD IHNVLRRKKF VLLLDDIWEK VELKVIGVPY PSGENGCKVA FTTHSKEVCG 301: RMGVDNPMEI SCLDTGNAWD LLKKKVGENT LGSHPDIPQL ARKVSEKCCG LPLALNVIGE TMSFKRTIQE WRHATEVLTS ATDFSGMEDE ILPILKYSYD 401: SLNGEDAKSC FLYCSLFPED FEIRKEMLIE YWICEGFIKE KQGREKAFNQ GYDILGTLVR SSLLLEGAKD KDVVSMHDMV REMALWIFSD LGKHKERCIV 501: QAGIGLDELP EVENWRAVKR MSLMNNNFEK ILGSPECVEL ITLFLQNNYK LVDISMEFFR CMPSLAVLDL SENHSLSELP EEISELVSLQ YLDLSGTYIE 601: RLPHGLHELR KLVHLKLERT RRLESISGIS YLSSLRTLRL RDSKTTLDTG LMKELQLLEH LELITTDISS GLVGELFCYP RVGRCIQHIY IRDHWERPEE 701: SVGVLVLPAI HNLCYISIWN CWMWEIMIEK TPWKKNLTNP NFSNLSNVRI EGCDGLKDLT WLLFAPNLIN LRVWGCKHLE DIISKEKAAS VLEKEILPFQ 801: KLECLNLYQL SELKSIYWNA LPFQRLRCLD ILNNCPKLRK LPLDSKSVVK VEEFVIKYKE KKWIERVEWE DEATQYRFLP TCRLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)