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AT1G11990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.396
golgi 0.281
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G62330.1); Has 811 Blast hits to 808 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 811; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIR1eggNOG:ENOG41101M4EMBL:CP002684EnsemblPlants:AT1G11990
EnsemblPlants:AT1G11990.1entrez:837751GeneID:837751GO:GO:0016021
GO:GO:0016757Gramene:AT1G11990.1hmmpanther:PTHR31933hmmpanther:PTHR31933:SF4
InParanoid:F4IAL1InterPro:IPR019378InterPro:IPR024709KEGG:00514+2.4.1.221
KEGG:ath:AT1G11990OMA:FNRETRVPaxDb:F4IAL1Pfam:PF10250
PIRSF:PIRSF009360PRIDE:F4IAL1ProteinModelPortal:F4IAL1Proteomes:UP000006548
RefSeq:NP_172663.2TAIR:AT1G11990TMHMM:TMhelixUniGene:At.51582
unipathway:UPA00378UniProt:F4IAL1
Coordinates (TAIR10) chr1:-:4046246..4049060
Molecular Weight (calculated) 67317.40 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.39
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQERPNDEE RPESRDLGVY GCSPPHSPRL GPTRFYVFAG DPNPKQTIKR CKRKRIQACN DQRTAKTAIG VMAILGFFCL VNWFMLSRLH EGRVWLRRGL
101: SENPKHVSAQ NEERKKFEKQ KMKYNGTYGR MLSLATDALA EGMRDNRYCN GFDFEQNKLE TKDLWQEPKE QASAWKPCAD QRSLTPDDGK NGYIMVTANG
201: GINQQRVAVC NIVVVARLLN AALVIPKFML SDVWTDASQF GDIYQEEHFM EYLSPDIRIV KELPKELQSL NLEEIGSVVT DIEVMKEAKP DFYMTHILPI
301: LLKNRVIHFV GFGNRLAFDP LPFELQRLRC RCNFHALNFV PRIQETAALL VKRLRGSGSY YLALHLRFEI DMVAHSLCYF GGGETEQKEL DSYRQKHFPS
401: LSTLTRKKKF RSADVLRTEG LCPLTPEEAV LMLAALGFNR ETRVFVAGAN IYGGSKRLAV LTSLYPNLVT KEKLLTESEL QPFKNFSSQL AALDFIACAA
501: ADAFAMTDSG SQLSSLVSGY RIYYGGGKLP TIRPNKRRLS DILLKNSTIE WNVFEKRVRK AIRQTKHVFA RPNGRSVYRY PRCKECMCHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)