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AT1G11920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
EpiLoc: nucleusiPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgi
Mitoprot 2: mitochondrionMultiLoc: endoplasmic reticulumPCLR: plastidPlant-mPloc: extracellular
Plant-mPloc: plasma membranePlant-mPloc: plastidPredotar: endoplasmic reticulumPredotar: extracellular
Predotar: golgiPredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgi
PProwler: endoplasmic reticulumPProwler: extracellularPProwler: golgiSLPFA: endoplasmic reticulum
SLPFA: extracellularSLPFA: golgiSLP-Local: endoplasmic reticulumSLP-Local: extracellular
SLP-Local: golgiSubLoc: cytosolTargetP: endoplasmic reticulumTargetP: extracellular
TargetP: golgiWoLF PSORT: plastidYLoc: extracellular
 no data
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 14 (TAIR:AT4G22080.1); Has 1675 Blast hits to 1668 proteins in 273 species: Archae - 0; Bacteria - 759; Metazoa - 0; Fungi - 209; Plants - 697; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11920-MONOMERCAZy:PL1EC:4.2.2.2eggNOG:COG3866
eggNOG:ENOG410IK4GEMBL:AC002131EMBL:CP002684EnsemblPlants:AT1G11920
EnsemblPlants:AT1G11920.1entrez:837742Gene3D:2.160.20.10GeneID:837742
Genevisible:O65388GO:GO:0030570GO:GO:0045490GO:GO:0046872
Gramene:AT1G11920.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF18HOGENOM:HOG000237948
InParanoid:O65388InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT1G11920KO:K01728
OMA:DSSHIWIPaxDb:O65388Pfam:O65388Pfam:PF00544
PIR:H86253PRINTS:PR00807PRO:PR:O65388ProteinModelPortal:O65388
Proteomes:UP000006548RefSeq:NP_172656.1SMART:SM00656SMR:O65388
STRING:3702.AT1G11920.1SUPFAM:SSF51126TAIR:AT1G11920UniGene:At.51578
UniPathway:UPA00545UniProt:O65388
Coordinates (TAIR10) chr1:-:4023667..4025097
Molecular Weight (calculated) 42694.90 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.22
Length 384 amino acids
Sequence (TAIR10)
(BLAST) 		001: MASLFLTIIS LLFAAFSSSV VEAAYSNGYT IPKLLPNPID SCWRRNPYWA SNRRALADCA VGFGKSAVGG KYGSIYVVTN PSDDPENPRP GTLRYAVIQS
101: KPLWITFARD MVIVLRNELI MNSYKTIDGR GAKVEIAYGP CITIQHVSHV IIHGISIHDC KPGKSGRVRS SPTHVGSRKG SDGDAIAIFD SSHIWIDHCF
201: FSRCQDGLID VLHASTAVTI SNNYFTQHDK VMLLGHNDNN VEDKIMRVTI AFNHFGPGLI ERMPRVRRGY AHVANNRYEK WQMYAIGGSA DPTIFSEGNY
301: FVASDDPSKK QVTKRIDSGY DWKRWKWRTS KDVFKNGAYF VPSGYGTVTP LYGRAERFPV SHGSLVPLLT SSAGPLHCYS GRIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)