AT1G11750.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CLP protease proteolytic subunit 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3967609..3969535 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31315.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 289 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGLAISPPL GLSFSSRTRN PKPTSFLSHN QRNPIRRIVS ALQSPYGDSL KAGLSSNVSG SPIKIDNKAP SSLPLPILNI LKSSTVYFIF GVIEAKKGNP 101: PVMPSVMTPG GPLDLSSVLF RNRIIFIGQP INAQVAQRVI SQLVTLASID DKSDILMYLN CPGGSTYSVL AIYDCMSWIK PKVGTVAFGV AASQGALLLA 201: GGEKGMRYAM PNTRVMIHQP QTGCGGHVED VRRQVNEAIE ARQKIDRMYA AFTGQPLEKV QQYTERDRFL SASEALEFGL IDGLLETEY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)