AT1G11740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.882 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G62050.1); Has 1132 Blast hits to 1026 proteins in 130 species: Archae - 4; Bacteria - 26; Metazoa - 550; Fungi - 29; Plants - 425; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3963317..3966824 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72460.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.16 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARSSPANIP ATTIDDYAHS PVHYAVVVGD HAGLTRLVSS LPKLTDPEQI HTESDSMSQE RVAEKISTVI DRRDVPFGET PLHLAVRLGD VFAAKTISSA 101: GADITLQNAA GWNSLHEALC RRNSEITEAI LRDHHRSAWC KWRRRLPHLI AVLSRMRDFY MEISFHFESS VIPFVGKIAP SDTYKIWKRG GDLRADTSLA 201: GFDGFKIRRA NQSFLFLSDG DEFLDVSPGT LLVLNRDDKT ILNAFENAKD PISDSDIAGF CGQSSLYRPG MDVTKAKLVE ITNWRRQAKI ETVGEWKAKA 301: YDVENVSFSF KSRKVGKEQG LRLDETRRSV SEPLRPQRRE QRRRSVSLPE AAILVANSSV GRIKEKEIVK SLRPSVWLTD QFPLKTEELL PLLDILANHV 401: KAVRRMRELL TTKFPAGTFP VKLSIPVIPT VKVVMTFSKF VALPPLDEFY TPLSSPKHLL AAMEDQHDVH DDEKLDRRIS SSRPSFSTPS WLRLNINATG 501: KSSRRRLVDE EQVVDPFTIP TGYKWTSNSD NSVYILHIST YLAHPKSVIL SLVFTKKSSK NQRYIRYWDH YKMASEAPSW ADQWGTGGIG VMAAEETTDG 601: KKDVTGKKSG KTKAGINKAK IVVFIGVNWM KNLVQRKKKD STSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)