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AT1G11475.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA polymerases N / 8 kDa subunit
Curator
Summary (TAIR10)
Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB10.
Computational
Description (TAIR10)
NRPB10; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G61700.1); Has 941 Blast hits to 941 proteins in 324 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 72; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11475-MONOMERBioGrid:22930eggNOG:COG1644eggNOG:KOG3497
EMBL:AC011661EMBL:AK118363EMBL:AK228397EMBL:AY084808
EMBL:BT025306EMBL:CP002684EnsemblPlants:AT1G11475EnsemblPlants:AT1G11475.1
entrez:837690Gene3D:1.10.10.60GeneID:837690GO:GO:0000418
GO:GO:0000419GO:GO:0003677GO:GO:0003899GO:GO:0005665
GO:GO:0005666GO:GO:0005736GO:GO:0006360GO:GO:0006366
GO:GO:0006383GO:GO:0008270Gramene:AT1G11475.1hmmpanther:PTHR23431
hmmpanther:PTHR23431:SF2HOGENOM:HOG000109502InParanoid:Q8LFJ6InterPro:IPR000268
InterPro:IPR009057InterPro:IPR020789InterPro:IPR023580KEGG:ath:AT1G11475
KO:K03007OMA:KKYCCRRPaxDb:Q8LFJ6Pfam:PF01194
Pfam:Q8LFJ6PhylomeDB:Q8LFJ6PIRSF:PIRSF005653PRIDE:Q8LFJ6
PRO:PR:Q8LFJ6ProDom:PD006539PROSITE:PS01112ProteinModelPortal:Q8LFJ6
Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-1834949
Reactome:R-ATH-674695Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210
Reactome:R-ATH-72086Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72203
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
Reactome:R-ATH-77075RefSeq:NP_849640.1scanprosite:PS01112SMR:Q8LFJ6
STRING:3702.AT1G11475.1SUPFAM:SSF46924TAIR:AT1G11475tair10-symbols:NRPB10
tair10-symbols:NRPD10tair10-symbols:NRPE10UniGene:At.44077UniProt:Q8LFJ6
Coordinates (TAIR10) chr1:+:3862520..3863805
Molecular Weight (calculated) 8315.17 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.10
Length 71 amino acids
Sequence (TAIR10)
(BLAST)
1: MIIPVRCFTC GKVIGNKWDQ YLDLLQLDYT EGDALDALQL VRYCCRRMLM THVDLIEKLL NYNTLEKSDN S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)