AT1G11420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 603 Blast hits to 525 proteins in 93 species: Archae - 19; Bacteria - 36; Metazoa - 149; Fungi - 17; Plants - 302; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3844581..3846872 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70275.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQMIFIRKD DKVEVFSEEE ELKGSYYRAI LEDNPTKSGH NKLKVRYLTQ LNEHRLAPLT EFVDQRFIRP VPSEDVNDGV VFVEGLMVDA YLKDGWWTGV 101: VVKTMEDEKF LVYFDCPPDI IQFEKKKLRV HLDWTGFKWI RPDNKELVKS VFSCGTMVEL RFDCAWIPVI VIKELEKDKR FLVKYWNKSY SCRESKNLIV 201: DSLRLRPMQP PLSVGKYELL DHVEAFSGFE WRQGVVRGIV FEGRYMVSFG ATKEASQFNH SDIRPPMEWE DGVWHKRTKP KRQKETSLDG NRNVQTKEPP 301: GNEMADDVKK ESGLPITLGV TATKNKTQGK VSPVPMKNGF GNESTREKMP EEPKIKYYTR KRKRGGLKLN SYINKTVLSS DRTPNVVKNS ASNAEENHAK 401: HTIMVLPFAK KSPVWKTYES LEVFKSVSHS LHFSPLFETK QDFREGYAIG MMVTYFGLLE KFKDLEADVP VSQLNSLKDS FSELEKHGFN VTTPLSRIDK 501: LLALKDRQLY IMEELKGFDK EMTNEFSKAK QEFDDMEQKI LEVKHKIIEL QRQEAALKEQ KEAEKEQKDA AWKKICQMES CAKDLNVELE DVEFEFETIL 601: SAPW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)