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AT1G11190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : bifunctional nuclease i
Curator
Summary (TAIR10)
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational
Description (TAIR10)
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11190-MONOMEREC:3.1.30.1eggNOG:ENOG410IKAPeggNOG:ENOG4111UE2
EMBL:AC007259EMBL:AY040016EMBL:AY079368EMBL:AY088393
EMBL:CP002684EMBL:U90264EnsemblPlants:AT1G11190EnsemblPlants:AT1G11190.1
entrez:837660Gene3D:1.10.575.10GeneID:837660Genevisible:Q9SXA6
GO:GO:0000014GO:GO:0003676GO:GO:0006308GO:GO:0010150
GO:GO:0016891GO:GO:0043765GO:GO:0046872GO:GO:0080187
GO:GO:0090305GO:GO:0090502Gramene:AT1G11190.1hmmpanther:PTHR33146
hmmpanther:PTHR33146:SF4HOGENOM:HOG000032024InParanoid:Q9SXA6InterPro:IPR003154
InterPro:IPR008947KEGG:ath:AT1G11190ncoils:CoilOMA:CKWGYKG
PaxDb:Q9SXA6Pfam:PF02265Pfam:Q9SXA6PhylomeDB:Q9SXA6
PIR:H86245PRIDE:Q9SXA6PRO:PR:Q9SXA6ProteinModelPortal:Q9SXA6
Proteomes:UP000006548RefSeq:NP_172585.1SMR:Q9SXA6STRING:3702.AT1G11190.1
SUPFAM:SSF48537TAIR:AT1G11190tair10-symbols:BFN1tair10-symbols:ENDO1
TMHMM:TMhelixUniGene:At.65036UniProt:Q9SXA6
Coordinates (TAIR10) chr1:-:3750338..3752696
Molecular Weight (calculated) 34886.50 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.32
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MASAFRSSTR LILVLGILIL CSVSSVRSWS KEGHILTCRI AQNLLEAGPA HVVENLLPDY VKGDLSALCV WPDQIRHWYK YRWTSHLHYI DTPDQACSYE
101: YSRDCHDQHG LKDMCVDGAI QNFTSQLQHY GEGTSDRRYN MTEALLFLSH FMGDIHQPMH VGFTSDEGGN TIDLRWYKHK SNLHHVWDRE IILTALKENY
201: DKNLDLLQED LEKNITNGLW HDDLSSWTEC NDLIACPHKY ASESIKLACK WGYKGVKSGE TLSEEYFNTR LPIVMKRIVQ GGVRLAMILN RVFSDDHAIA
301: GVAAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)