AT1G11180.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.754 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Secretory carrier membrane protein (SCAMP) family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Secretory carrier membrane protein (SCAMP) family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 667 Blast hits to 665 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 14; Plants - 226; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:3745829..3748307 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 32629.70 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.55 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||
Length | 291 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGGRYDRNTF DEQDEVNPFA NPGSVPAASN SRLSPLPPEP AGFGYGRTVD IPLDRPGSGA QDLKKKEKEL QAKEADLRRR EQDLKRKQDA AARAGIVIEA 101: KNWPTFFPLI HHDIANEILV RLQRLQYIAF ATYLGLVLAL FWNIIAVTTA WIKGEGVTIW LLAVIYFISG VPGGYVLWYR PLYRAFRSDS AFNFGWFFLF 201: YMLHILFCLF AAVAPPIVFK GKSLAGILPA IDVLSAQALV GIFYFIGFGL FCLESVVSIW VIQQVYMYFR GSGKADDMRR DAARGAMRAA I |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)