AT1G10970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.607 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc transporter 4 precursor | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3665201..3666933 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43173.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.45 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIFVDVLWKL FPLYSFGSGR DSLSESILQI IPETMASSTT KILCDAGESD LCRDDSAAFL LKFVAIASIL LAGAAGVAIP LIGRNRRFLQ TEGNLFVAAK 101: AFAAGVILAT GFVHMLAGGT EALSNPCLPD FPWSKFPFPG FFAMVAALAT LLVDFMGTQY YERKQERNQA ATEAAAGSEE IAVVPVVGER VTDNKVFGEE 201: DGGGIHIVGI RAHAAHHRHS HSNSHGTCDG HAHGHSHGHM HGNSDVENGA RHVVVSQILE LGIVSHSIII GLSLGVSQSP CTIRPLIAAL SFHQFFEGFA 301: LGGCISQAQF RNKSATIMAC FFALTTPLGI GIGTAVASSF NSHSPGALVT EGILDSLSAG ILVYMALVDL IAADFLSKRM SCNLRLQVVS YVMLFLGAGL 401: MSALAIWA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)