AT1G10880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.800 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Putative role in response to salt stress. Mutants grow larger than the wild type under salt stress condition (Ann Stapleton and Ashley Green, 2009, personal communication). | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G16170.1); Has 696 Blast hits to 692 proteins in 56 species: Archae - 2; Bacteria - 7; Metazoa - 8; Fungi - 7; Plants - 576; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3624035..3627021 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76134.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 651 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKQKITTFV KELNLRMNSK KEPISLRYIH ILGTVVFFSS VSSLVILLAF YLNQRLQTSL FLVEDYHTLS SNPLTSPSLS PPPSPSPRSS GSNIADEELM 101: WRAAMAPRSP MKNETHPKVA FMFLTRWNLP LSPLWEMFFK GHEGFYSIYV HTSPEFTQEP PESSVFYKKR IPSKAVEWGK CSMMDAEKRL ISHALLEPSN 201: ARFVLLSETC IPLFNFTTIY TYLTRSTRSF LGSFDDPRPM GRGRYTPKML PHVSLSDWRK GNQWFEISRR VAAEIVSDRR YYAVFKDHCR PPCYIDEHYL 301: PTLVNKICPE MNSNRTVTWV DWSRGGSHPA RFVRKDIRVG FLDRIRFGSN CSYEGEAMEV AKIGRKKTSR NVGHHDIVGS KRNQYHYAKS IEENENMVKE 401: MQQQMLQIDK EIREKTYISG LEYNLNHRWR PIEDYQPIVY FRSKCPEKMV LDKLTFANNA YRDKKAVISF ASGEREINIH NLNHQMLHNA HCMDGGERRL 501: LKMLNPNKDI DSGSSLAQVE EQKWPYLNTT STITIDEETY SRKQREFECE RDQVFVNAPS KASLWKSLPS TKDLRDQIQA MELKGEQKRK KVVGRRKKIE 601: SRERKIKKTE NEIKSMRKTM ERILNRMHKA LETISHERTC LEKKITILYN G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)