AT1G10710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : poor homologous synapsis 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Computational predictions suggested the presence of a small cysteine-rich protein beginning in intron 9 (Silverstein 2007), but subsequent analysis revealed that this region contains a tenth exon for the At1g10710 gene. PHS1 regulates recombination and pairing of homologous chromosomes during meiotic prophase by controlling transport of RAD50 from cytoplasm to the nucleus. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
POOR HOMOLOGOUS SYNAPSIS 1 (PHS1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10717.1); Has 43 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3558423..3561495 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46557.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGSLTASNR RRNAEDSSEI YRWTIGFARF VHYPSSPSPH PVLKPLGKRE QYHSPHGTWL SASSSTVSLH IVDELNRSDV ILSVKLGQKV LEEHYISKLN 101: FTWPQMSCVS GFPSRGSRAI FVTYMDSANQ IQKFALRFST CDAALEFVEA LKEKIKGLKE ASTQNQKNKT RCDVSFQSDY NPSDAIIPRA TQKEPNMVRP 201: LNSYVPEMLP RIVYEAQYQK SETRSEVSFQ SDYNPSIEIF PRATEEEPNM VRFFDSSVPE VLPRPEYEAG QALYPSQSTL NQIPSLPPSF TTLLSGCFPD 301: STLDAGQTTV KQNPDLKSQI LKYMEDSSFQ DMLQKVERII DEIGDRCVGS TIGRSSKIYI PLCFHNNCIH PFKDDCWCCL AAGTKKDWCW LEKDFPDAKE 401: LCMKTCTRKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)