AT1G10417.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.653 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3424616..3427457 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 50134.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||
| Length | 431 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEMLKLSKFK LQLQSMIGEV RDLRVRRKRF LYIYGLCIFF APPVSLFFFF VFFHFTTGVF AGKGAISHRS HYSCESGSSI NKQKQTEEDC IRKVQELQAD 101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ 201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM 301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY 401: LQHNTVSGHW QSTNNHNHFE LEAIQRVDEP A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)