AT1G10380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Putative membrane lipoprotein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 280 Blast hits to 279 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3400706..3402110 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33952.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||||||
| Length | 305 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLKRSSSSF FIFLFSFFFL SSHVSSQACQ KTCGQIPIKY PLGTGSGCGD PRFTRYITCD PDQQTLTLTT HTGSYPITSV DYAKQEIYVT DPSMSTCACT 101: RPSHGFGLDW DAPFSFHDDT VFTLLDCSVD ESPVFTPLSN GSGRVSLCDR QSSSICTFLY SNCRAISLIN LQVSTCCVYV PLDLGPSFEM DLNKLKCSSY 201: SGFYNLGPGQ ESHPENWNYG IALKYKFNVF DEYPGVCGSC ERSNGACGFN TQSSSFVCNC PGGINTTSDC FFLYNSASIL VPWFSREWVM YPLSWFVVWM 301: VMVLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)