AT1G10340.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G24600.4); Has 20842 Blast hits to 11682 proteins in 536 species: Archae - 22; Bacteria - 1442; Metazoa - 11586; Fungi - 1324; Plants - 2714; Viruses - 98; Other Eukaryotes - 3656 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3390475..3392481 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63593.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 574 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQPIFHAILK NDLPAFLELV EDSESSLEER NEEEHLNNTV LHMAAKFGHR ELVSKIIELR PSLVSSRNAY RNTPLHLAAI LGDVNIVMQM LETGLEVCSA 101: RNINNHTPLH LACRSNSIEA ARLIAEKTQS IGLGELILAI SSIVGTILER FPDLAREEAW VVEDGSQSTL LHHACDKGDF ELTTILLGLD QGLEEALNPN 201: GLSPLHLAVL RGSVVILEEF LDKVPLSFSS ITPSKETVFH LAARNKNMDA FVFMAESLGI NSQILLQQTD ESGNTVLHIA ASVSFDAPLI RYIVGKNIVD 301: ITSKNKMGFE AFQLLPREAQ DFELLSRWLR FGTETSQELD SENNVEQHEG SQEVEVIRLL RIIGINTSEI AERKRSKEQE VERGRQNLEY QMHIEALQNA 401: RNTIAIVAVL IASVAYAGGI NPPGGVYQDG PWRGKSLVGK TTAFKVFAIC NNIALFTSLG IVILLVSIIP YKRKPLKRLL VATHRMMWVS VGFMATAYIA 501: ASWVTIPHYH GTQWLFPAIV AVAGGALTVL FFYLGVETIG HWFKKMNRVG DNIPSFARTS SDLAVSGKSG YFTY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)