AT1G10330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.628 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 31141 Blast hits to 12595 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 42; Plants - 30558; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3388747..3390150 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51433.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.82 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRCTSFSSFS LSLEDALHLL QRFLYSSNQI KQIHTVLLTS NALVASRWKT KCVYNTLIRS YLTTGEYKTS LALFTHMLAS HVQPNNLTFP SLIKAACSSF 101: SVSYGVALHG QALKRGFLWD PFVQTSFVRF YGEVGDLESS RKMFDDILNP CVVACNSLLD ACGRNGEMDY AFEYFQRMPV TDVVSWTTVI NGFSKKGLHA 201: KALMVFGEMI QNERAVITPN EATFVSVLSS CANFDQGGIR LGKQIHGYVM SKEIILTTTL GTALLDMYGK AGDLEMALTI FDQIRDKKVC AWNAIISALA 301: SNGRPKQALE MFEMMKSSYV HPNGITLLAI LTACARSKLV DLGIQLFSSI CSEYKIIPTS EHYGCVVDLI GRAGLLVDAA NFIQSLPFEP DASVLGALLG 401: ACKIHENTEL GNTVGKQLIG LQPQHCGQYV ALSTFNALDS NWSEAEKMRK AMIEAGIRKI PAYSVLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)