AT1G10170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NF-X-like 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NF-X-like 1 (NFXL1); FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (TAIR:AT5G05660.1); Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0; Bacteria - 123; Metazoa - 4814; Fungi - 547; Plants - 327; Viruses - 10; Other Eukaryotes - 960 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3333925..3337491 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 130723.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1188 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSFQVRRDRS DDRSHRFNHQ QTWIPRNSST SSVVVNEPLL PPNTDRNSET LDAGSASRPV YLQRQHNASG PPSYNHHQRS SNIGPPPPNQ HRRYNAPDNQ 0101: HQRSDNIGPP QPNQHRRYNA PDNQHQRSDN SGPPQPYRHR RNNAPENQHQ RSDNIGPPPP NRQRRNNASG TLPDNRQRVA SRTRPVNQGK RVAKEENVVL 0201: TDPNLPQLVQ ELQEKLVKSS IECMICYDKV GRSANIWSCS SCYSIFHINC IKRWARAPTS VDLLAEKNQG DNWRCPGCQS VQLTSSKEIS YRCFCGKRRD 0301: PPSDPYLTPH SCGEPCGKPL EKEFAPAETT EEDLCPHVCV LQCHPGPCPP CKAFAPPRSC PCGKKMVTTR CSERRSDLVC GQRCDKLLSC GRHQCERTCH 0401: VGPCDPCQVL VNATCFCKKK VETVICGDMN VKGELKAEDG VYSCSFNCGK PLGCGNHFCS EVCHPGPCGD CDLLPSRVKT CYCGNTRLEE QIRQSCLDPI 0501: PSCSNVCRKL LPCRLHTCNE MCHAGDCPPC LVQVNQKCRC GSTSRAVECY ITTSSEAEKF VCAKPCGRKK NCGRHRCSER CCPLLNGKKN DLSGDWDPHV 0601: CQIPCQKKLR CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GRTSIPPPLS CGTPVPSCQL PCPIPQPCGH SDTHGCHFGD CPPCSTPVEK KCVGGHVVLR 0701: NIPCGLKDIR CTKICGKTRR CGMHACARTC HPEPCDSFNE SEAGMRVTCR QKCGAPRTDC RHTCAALCHP SAPCPDLRCE FSVTITCSCG RITATVPCDA 0801: GGRSANGSNV YCAAYDEASV LQKLPAPLQP VESSGNRIPL GQRKLSCDDE CAKLERKRVL QDAFDITPPN LEALHFSENS AMTEIISDLY RRDPKWVLAV 0901: EERCKFLVLG KARGSTSALK VHIFCPMQKD KRDTVRLIAE RWKLGVSNAG WEPKRFTVVH VTAKSKPPTR IIGARGGAIS IGGPHPPFYD SLVDMDPGLV 1001: VSFLDLPREA NISALVLRFG GECELVWLND KNALAVFHDH ARAATAMRRL EHGSVYHGAV VVQSGGQSPS LNNVWGKLPG SSAWDVDKGN PWRRAVIQES 1101: DDSWGAEDSP IGGSSTDAQA SALRSAKSNS PIVTSVNRWS VLEPKKASTS TLEPIAQIEE SSSSKTTGKQ PVEGSGEEVV DDWEKVCE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)