AT1G10150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding protein; FUNCTIONS IN: carbohydrate binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G59510.1); Has 114 Blast hits to 112 proteins in 22 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3326160..3327404 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45520.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.83 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLLRLREKG IFLSQRRRKW LIFMAISGVS GYGAYKVYHL PSVARKRKRL FKLFGAIVSV AELISDSAET LSMVSRDVKD FLNSDSDEIP NSLKQIAKIT 101: TSNEFTDSLS RVSQAVTIGA FRGYKSESSI GDSGIEKSSD SSVVDRVIDK VFSEAGTGFV SVVVGSFAKN LVLGFYSGKV ESGVKCEGSD SSETPRWVTL 201: LGDDKCRELL ADCIERFTST AIGVYLDKTM DINTYDQIFE GLTNPKHQDS VKDVLVSVCN GALETIVRTS HDVFTSSRSK NVIEEIEDDD FKSNGSARSK 301: MVSESGDGVK SNGWTEAIAT TLAVPSNRRF MFDVTGRVTL ETTRSIIAFI MVKTFQGFRK SINVVHEEVT DRGRQAVEYV GAKSSVIITV CLALYLHIIS 401: GCVRNSPIGV SQHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)