AT1G09880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhamnogalacturonate lyase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 288 Blast hits to 274 proteins in 61 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 85; Plants - 160; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3208828..3211653 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72392.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 631 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENRFLQLTL SNPEGFVTGI QYNGIDNVLA YYTNKEYDRG YWDVVWNFPG KKAKKTKGTL DRIEATKMEV ITQNDEKIEL SFTRTWNTSS TTAVPVNIDK 101: RFVMLQNSSG FYSYAIFERL QGWPAVELDN MRLVFKLNKK KFHYMAISDD RQRYMPVPDD RVPPRGQPLA YPEAVQLLDP IEPEFKGEVD DKYEYSMESK 201: DIKVHGWIST NDSVGFWQIT PSNEFRSAGP LKQFLGSHVG PTNLAVFHST HYVGADLIMS FKNGEAWKKV FGPVFIYLNS FPKGVDPLLL WHEAKNQTKI 301: EEEKWPYNFT ASDDFPASDQ RGSVSGRLLV RDRFISSEDI PANGSYVGLA APGDVGSWQR ECKGYQFWSK ADENGSFSIN NVRSGRYNLY AFAPGFIGDY 401: HNDTVFDISP GSKISLGDLV YEPPRDGSTL WEIGVPDRSA AEFYIPDPNP SFVNKLYLNH SDKYRQYGLW ERYSELYPDE DMVYNVDIDD YSKNWFFMQV 501: TRKQANGGYK GTTWQIRFQF DDKMKNVTGN FKLRIALATS NVAELQVRVN DLSADPPLFR TEQIGRDNTI ARHGIHGLYW LYSVNVPAAS LHVGNNTIYL 601: TQALATSPFQ GLMYDYIRLE YPDSINYITR S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)