AT1G09650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.612 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G12490.1); Has 1173 Blast hits to 1151 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 1160; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3125978..3127126 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43557.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 382 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKKQRCLMM ESLPHEVVEC ILERLDADPL LRFKAVSKQW KSTIESPFFQ RRQFTQRQQS GNPDVLMVSR CADINSEIEA LTTLVLGSSS SVKIPTPWEE 101: EEEEDKEYSV SQDSCDGLVC LFDKFKSGFV FNPATRWYHP LPLCQLQQLL IAIGDGFYDL GYRVSRLGFG KDKLTGTYKP VWLYNSIEIG LENATTCEVF 201: DFSTNAWRYV SPAAPYRIVG CPAPVCVDGS LHWFTECEET KILSFDLHTE TFQVVSKAPF ANVDGFDIVM CNLDNRLCVS EMKLPNQVIW SFNSGNKTWH 301: KMCSINLDIT SRWFGPTQVC AVLPLALLDG KKKKKKKLLF YCRVRKRTMV VHDDETKSYD VAFEADSIGH PVCYFPSLIS IS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)