AT1G09570.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochrome A | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3095498..3098892 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112628.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1014 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASHAVPSVG EHPVLGIGTD IRSLFTAPSA SALQKALGFG DVSLLNPILV HCRTSAKPFY AIIHRVTGSI IIDFEPVKPY EVPMTAAGAL QSYKLAAKAI 0101: TRLQSLPSGS MERLCDTMVQ EVFELTGYDR VMAYKFHEDD HGEVVSEVTK PGLEPYLGLH YPATDIPQAA RFLFMKNKVR MIVDCNAKHA RVLQDEKLSF 0201: DLTLCGSTLR APHSCHLQYM ANMDSIASLV MAVVVNEEDG EGDAPDATTQ PQKRKRLWGL VVCHNTTPRF VPFPLRYACE FLAQVFAIHV NKEVELDNQM 0301: VEKNILRTQT LLCDMLMRDA PLGIVSQSPN IMDLVKCDGA ALLYKDKIWK LGTTPSEFHL QEIASWLCEY HMDSTGLSTD SLHDAGFPRA LSLGDSVCGM 0401: AAVRISSKDM IFWFRSHTAG EVRWGGAKHD PDDRDDARRM HPRSSFKAFL EVVKTRSLPW KDYEMDAIHS LQLILRNAFK DSETTDVNTK VIYSKLNDLK 0501: IDGIQELEAV TSEMVRLIET ATVPILAVDS DGLVNGWNTK IAELTGLSVD EAIGKHFLTL VEDSSVEIVK RMLENALEGT EEQNVQFEIK THLSRADAGP 0601: ISLVVNACAS RDLHENVVGV CFVAHDLTGQ KTVMDKFTRI EGDYKAIIQN PNPLIPPIFG TDEFGWCTEW NPAMSKLTGL KREEVIDKML LGEVFGTQKS 0701: CCRLKNQEAF VNLGIVLNNA VTSQDPEKVS FAFFTRGGKY VECLLCVSKK LDREGVVTGV FCFLQLASHE LQQALHVQRL AERTAVKRLK ALAYIKRQIR 0801: NPLSGIMFTR KMIEGTELGP EQRRILQTSA LCQKQLSKIL DDSDLESIIE GCLDLEMKEF TLNEVLTAST SQVMMKSNGK SVRITNETGE EVMSDTLYGD 0901: SIRLQQVLAD FMLMAVNFTP SGGQLTVSAS LRKDQLGRSV HLANLEIRLT HTGAGIPEFL LNQMFGTEED VSEEGLSLMV SRKLVKLMNG DVQYLRQAGK 1001: SSFIITAELA AANK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)