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AT1G09260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.520
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G25560.1); Has 2956 Blast hits to 2955 proteins in 867 species: Archae - 40; Bacteria - 1338; Metazoa - 620; Fungi - 249; Plants - 426; Viruses - 3; Other Eukaryotes - 280 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AC003114EMBL:CP002684
EnsemblPlants:AT1G09260EnsemblPlants:AT1G09260.1entrez:837447Gene3D:1.10.287.110
GeneID:837447Gramene:AT1G09260.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF193
InterPro:IPR001623KEGG:ath:AT1G09260Pfam:PF00226Pfscan:PS50076
PhylomeDB:O80481PIR:E86225PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_172397.1SMART:SM00271SMR:O80481STRING:3702.AT1G09260.1
SUPFAM:SSF46565TAIR:AT1G09260UniGene:At.51532UniProt:O80481
Coordinates (TAIR10) chr1:+:2993404..2993820
Molecular Weight (calculated) 16146.50 Da
IEP (calculated) 10.29
GRAVY (calculated) -0.62
Length 138 amino acids
Sequence (TAIR10)
(BLAST)
001: MNDSMKAPKF FKNQLKLAEA HYQRGNLKGA IEIVNDLTFG HPNTSSNHHE ISQILLAYQI NLTSQKASFT HYDILRISNP FCSHQMIQRK YRDILVKLYP
101: DTNKSIAAKS AFEIINYAWK ILSDPEKRKD YNIKKRFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)