AT1G09170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: shoot, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0; Bacteria - 101; Metazoa - 5767; Fungi - 1479; Plants - 1905; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2956589..2962207 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111375.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1010 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MATEQQDSQL CLATILEDFL KQRNIQVSVG VDSSSLKKAD ETFGGRDLPV DPSDLRRYEA ARWVRNTLGV VGGRDLPADP SEEDFRIALR SGILLCNVLN 0101: RVKPGAVPKV VEAPNDPLVN QDGAALSAFQ YFENLRNFLV FVEEMGIPTF EVSDFEKGGK SARIVECVLA LKSYREWKQS GGSGTWRYIL NSKPTTFGIA 0201: KQYKRKDSEV PVDAVTNSPS STPSSEQPLL DQSDSNTKND GTASSIDAIV RAVFSDMKQE DIPVIVEDML KSVMVEYERR LATQNELLLM SAGNRDKLGS 0301: GDLGRTISGN EETLSDASYG EENVTEIVNN NMEASQDSNV EELENQDYEL YAISKEKTEK QQLIIERQQT HTEELKHDLK AVKAGLSLLQ MKYQQEFTSL 0401: GKHLHGLTYA ATGYQRVLEE NRKLYNQVQD LKGSIRVYCR VRPFLPGQKS VLTTVDHLED STLSIATPSK YGKEGQKTFT FNKVFGPSAS QEAVFADTQP 0501: LIRSVLDGYN VCIFAYGQTG SGKTFTMMGP NELTDETLGV NYRALSDLFH LSKIRNSTQD GINVPEATLV PVSTTSDVIH LMNIGQKNRA VSATAMNDRS 0601: SRSHSCLTVH VQGKDLTSGV TLRGSMHLVD LAGSERIDKS EVTGDRLKEA QHINKSLSAL GDVIASLSQK NNHIPYRNSK LTQLLQDALG GQAKTLMFIH 0701: ISPELEDLGE TLSTLKFAER VATVDLGAAR VNKDTSEVKE LKEQIASLKL ALARKESGAD QTQLQRPLTP DKLLRKKSLG VSSSFSKSAN STRQVQTKHK 0801: PSQIDDVNSI EGQSDSASSL DLQGLVGSPS WKTPPRDGKE EDMEFIIPGS EWVDKHEDEI TRSSKPENRA HTQLEKRTSS LKREATRGVD KNKCNSSVDK 0901: GLEVRKIPYE EEANESDETA TSDCSETNLM WQLNVQVNMP RPASNGSSTK LKKNQSKISR VAAETRSMIP SLIPTPTRTL SLGAAISSPG QTSSRHNNST 1001: VVVKKRQNPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)