AT1G08840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA replication helicase, putative | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6121 Blast hits to 5421 proteins in 1016 species: Archae - 240; Bacteria - 1986; Metazoa - 1238; Fungi - 1140; Plants - 545; Viruses - 30; Other Eukaryotes - 942 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2829579..2838369 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143257.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 1296 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPPRKKPKSS ALKSNKQSSA NHSSQPSTFG IQQLFLRHIQ NSQSTSNSHT STADPVDQQN VNGLASDTAV LTPQNPLGTS NEKPDESKDM DQQLTEASPK 0101: ISKNLKRFSP GMLIKQSQDD CGGEITWKIS PVNERLRAAA KNIPKMMDLT ENSLGKQCPT SGITSKVEQW LSSPSKKASK RPAFATNRVM ERVNPSPDAE 0201: FEIVNTSSSG NSPFQTPPSL SCPHNKLPCT VTCSGACGSM GAGQHKKALL ELLDQVEDVI AVDDKTTDDV GIVMPQARVK DDIISSVVDC AVDEGPVSLP 0301: KMQNSINPDS YFLVLEVSEK RGSGSSSKGQ CPYKVLRLLD EHTGVECALY LWDEWFYSTV SPGDSINVIG EFDGDGKCDV DRQNNFLIVH PDTLVAGTRV 0401: AASFGCPRRT VLDERLRSNE HATVALLGTL QHQVFQAGLS QESPSVDGLQ EYASTVIEKS IESLYACGVH EGDVRSTLFK AIPKMLNWIE HFRYSKDSEV 0501: SKVDFGSTIG KKAVKVSEVI DIEEMSWAPK YGLKGMIDAS VRVIVESDMN TVNEKIMPLE FKSGKAPSGQ SSIEHSAQVI LYTLLMSERY LKHIDNGLLY 0601: YLQSDQTQGI SVQRSDLVGL IIRRNELAND ILVASTTQQL PPMLRADGGN TESSGLGDVF DTHVSHLSTL HFNFLRHWDR LIDLEGREMQ LLRKDIAHPH 0701: GSKGSHSASY LSSMVLDVTN GFQHHNSHKE TRFIYRFVRQ KSSESRERVT SEDMIRTGNL ATDDLDCKLR TGDRVILRTE VSHLTVANGI IADISRTHIS 0801: VSLSKRLRLP WSEPSSEVSN LSHELWRIYK DEFMTSFSVM RFNLMQLFVQ NGHNIRKMIV DLEPPRFDNG SILSQDPAIS YIWSEKSLNN DQRQAILKIL 0901: TAKDYALILG MPGTGKTSTM VHAVKALLIR GSSILLASYT NSAVDNLLIK LKAQGIEFLR IGRDEAVHEE VRESCFSAMN MCSVEDIKKK LDQVKVVAST 1001: CLGINSPLLV NRRFDVCIID EAGQIALPVS IGPLLFASTF VLVGDHYQLP PLVQSTEARE NGMGISLFRR LSEAHPQAIS VLQNQYRMCR GIMELSNALI 1101: YGDRLCCGSA EVADATLVLS TSSSTSPWLK KVLEPTRTVV FVNTDMLRAF EARDQNAINN PVEASIIAEI VEELVNNGVD SKDIGIITPY NSQASLIQHA 1201: IPTTPVEIHT IDKYQGRDKD CILVSFVRSR EKPRSSASSL LGDWHRINVA LTRAKKKLIM VGSQRTLSRV PLLMLLLNKV KEQSGILNLL PGDLKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)