AT1G08400.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.626 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RINT-1 / TIP-1 family | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RINT-1 / TIP-1 family; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT3G47700.1); Has 146 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 34; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:2643348..2646005 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 92357.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 804 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLPMEHPLPL SFVLPNPATL PGLALGFIDG NFVDLQDLLL RASTLTSNLN HDCSDLNDRL LHLRTDLTKH AVSWISTSLS AKVSLEDLRL NLESLLCLPT 101: DSVGKQTNWE LQQVVEELCR IQNRRKYFVT ALKLESLVGD LEDSVFHPIS KRKGSTLQDL ALKQERFSHA IKTMNEIEEI LGDVTRHHSR WRRLVDSVDS 201: RVDKSLSVLR PQIIADHRAF LSSLGWPPKL ATSKVEHGEV DSIPNPLLLM QGDKKESYSQ SFLLLCGLQQ HNTQKEKRKK LNMTKETDND GLWATDELVK 301: PVASRMEYHF LKWAEQPEFI FELVYKVTRD FADGVDDFLQ PLIDRAMLVS CSAKEAWVSA MVQMLSGFLE KKVFPGLIDM YKEKHMKSEG ISSWFHLVDQ 401: MVTFDKRMQS FVNTDTCLSY EGSSTAFSQG ISVMGLFCKK PEWLKTWGKI ELKDAYRKSK EDIKNEKAWV IDSERTRLGN ESNSQSAKYV LSTREDYKAP 501: LVADSFLNRT WRLIDHGLSL PAILPRIQFI RATATRFLWC IFKILLLEFK KTDLSHYGLS EDTLIQACGP VNAARYLESK LREWSDDLVF VEMWAAETSV 601: KVDRKPEVSC QGCFFGEELK SLVELETNWL MEIITVFLHQ FDNLCSDHFH NNAVSWDEDV ITSSSNLTVS QGVAEALDNL RRHLCVLHLN MNPKDFLDLW 701: RNLAEGLDHY VSRKFFSGEP VLRRQKFDRF EVDAEALLTV LKPYCVRPGA FFPRVREILR LLRMHEEEKA RLRGALSRSG NTCLKLFGIS NLSPQLVEQF 801: CRSY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)