AT1G08140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.703 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 6A | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 6A (CHX6A); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1); Has 1486 Blast hits to 1465 proteins in 477 species: Archae - 56; Bacteria - 742; Metazoa - 0; Fungi - 110; Plants - 524; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2552206..2555074 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93400.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 818 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATEEIDMSY WDVSWGEFNE DKNSSIFCES HPHIVNSHGI WEVMTFKRGM NFWEYPLPNL EILIFSTFFI WRLLDISFNK IGLRVPRFTY MMIAGIILGQ 101: TCHFSNKSWI HDIFFPDDNR PKVAETLGAF GFVLYWFLKG VTMDAELPFR TEKRSSVIGF ITVIIPLICG SLTFRYRERR GDSSILRMEY RLIIFLQSIS 201: AFTSIDTLLK DLQIKHSEFG RIALSGAMVT DMLAFGVTFF NAIYYEKLYG FMQTVGFCLF VVVMICVVRP AMYWVIKQTP EGRPVKDFYL YSIFGIAFAC 301: FTFFNKVIHL FGPAGSFVFG LTVPNGYPLG TTLIQKFESF NLGSILPLFG SLTMMQVDLL RLFKESGDLI RMEGQIYEVI SFILLVNTTK FVVTTITAYA 401: FKMPLRDSFA LALVLSNKGI FELAYYTYAV ELKLIRPEVF TILAAYTLLN SIFIPMLLEL VHDPTKRFRC YRKRNLGILK DGAALQCLMC VYRPDHITSM 501: TDLLETFSPS QDSPMACNIL HLVELVGQAN PMFISHQLQK PEPGSTSLSD NVIISFRGFQ RQFFEYTSLD IFTSVSVSQH MHEDICWLAL SRSLSLIVLP 601: FHRTWSVDRS TVISNDDNLR MLNVNVLRRA PCSVGIFVYR KPIVESHMAK SHSKICLIFN GGKDDREALA ITNRMRLTEK RTRLTIIRFI PKSSEMDNDE 701: WEQQQSINLK ESVTSIVGSN IKENDAKVTY IDKAVSDGSE TSRILRAMAN DYDLFIVGSG SGIGTEATSG ISEWTEFNEL GPIGDLLASH EYPSSASVLV 801: VQKQVYIHHT KSQRRKSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)