AT1G07850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.651 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF604); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 101 Blast hits to 95 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 16; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2426745..2428719 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 62118.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.88 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNSSSSNTN LSNPKNILLE DHHHQRNQAQ NHSNSARTSH LSFLRSPLPW LFIFLFFLPL LLISTTGGGG SRKTCRPSSS TYSHLSLVDK ANSSSSVVPE 101: EEDDDVPPRV PALYPQRPRM FNTTLDHIVF GIAASSVLWE TRKEYIKSWW RPGKTRGVVW IDKRVRTYRN DPLPEIRISQ DTSRFRYTHP VGDRSAVRIS 201: RVVTETLRLG KKGVRWFVMG DDDTVFVVDN VVNVLSKYDH TQFYYVGSSS EAHVQNIFFS YSMAFGGGGF AISYALALEL LRMQDRCIQR YPGLYGSDDR 301: IQACMTELGV PLTKEPGFHQ YDVYGDLLGL LGAHPVAPLV SLHHIDVVQP IFPKMKRSRA LRHLMSSAVL DPASIFQQSI CYDQNRFWSI SVSWGFVVQI 401: IRGIISPREL EMPSRTFLNW FRKADYIGYA FNTRPVSRHP CQRPFVFYLN SAKYDEGRRQ VIGYYNLDKT RRIPGCRWRL DSPGKIDSVV VLKRPDPLRW 501: HKSPRRDCCR VLPSRRNQTM YIWVGNCADG EISELEHPQQ H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)