AT1G07520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRAS family transcription factor | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G29065.1); Has 2426 Blast hits to 2385 proteins in 289 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 2411; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2309718..2311805 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79255.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||
| Length | 695 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNYSGVVN GYDVSFLPTS IPDLGFGVPS SSDFDLRMDQ YYHQPSIWVP DQDHHFSPPA DEIDSENTLL KYVNQLLMEE SLAEKQSIFY DSLALRQTEE 101: MLQQVISDSQ TQSSIPNNSI TTSSSSNSGD YSNSSNSSVR IENEVLFDNK HLGDSGVVSF PGSNMLRGGE QFGQPANEIL VRSMFSDAES VLQFKRGLEE 201: ASKFLPNTDQ WIFNLEPEME RVVPVKVEEG WSAISKTRKN HHEREEEEDD LEEARRRSKQ FAVNEEDGKL TEMFDKVLLL DGECDPQIIE DGENGSSKAL 301: VKKGRAKKKS RAVDFRTLLT LCAQSVSAGD KITADDLLRQ IRKQCSPVGD ASQRLAHFFA NALEARLEGS TGTMIQSYYD SISSKKRTAA QILKSYSVFL 401: SASPFMTLIY FFSNKMILDA AKDASVLHIV DFGILYGFQW PMFIQHLSKS NPGLRKLRIT GIEIPQHGLR PTERIQDTGR RLTEYCKRFG VPFEYNAIAS 501: KNWETIKMEE FKIRPNEVLA VNAVLRFKNL RDVIPGEEDC PRDGFLKLIR DMNPNVFLSS TVNGSFNAPF FTTRFKEALF HYSALFDLFG ATLSKENPER 601: IHFEGEFYGR EVMNVIACEG VDRVERPETY KQWQVRMIRA GFKQKPVEAE LVQLFREKMK KWGYHKDFVL DEDSNWFLQG WKGRILFSSS CWVPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)