AT1G07420.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sterol 4-alpha-methyl-oxidase 2-1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sterol 4-alpha-methyl-oxidase 2-1 (SMO2-1); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-2 (TAIR:AT2G29390.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2278918..2280033 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26595.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||
| Length | 228 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLLPFMVNT YFSFVPMQTK NNTPAAQGKC ITRLLLYHFS VNLPLMLASY PVFRAMGMRS SFPLPSWKEV SAQILFYFII EDFVFYWGHR ILHSKWLYKN 101: VHSVHHEYAT PFGLTSEYAH PAEILFLGFA TIVGPALTGP HLITLWLWMV LRVLETVEAH CGYHFPWSLS NFLPLYGGAD FHDYHHRLLY TKSGNYSSTF 201: VYMDWIFGTD KGYRRLKTLK ENGDMKQT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)