AT1G07120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 ASURE: cytoskeleton What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2184874..2186580 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44932.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.86 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||
| Length | 392 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPNGEDDSD LLRLVKELQA YLVRNDKLEK ENHELRQEVA RLRAQVSNLK SHENERKSML WKKLQSSYDG SNTDGSNLKA PESVKSNTKG QEVRNPNPKP 101: TIQGQSTATK PPPPPPLPSK RTLGKRSVRR APEVVEFYRA LTKRESHMGN KINQNGVLSP AFNRNMIGEI ENRSKYLSDI KSDTDRHRDH IHILISKVEA 201: ATFTDISEVE TFVKWIDEEL SSLVDERAVL KHFPKWPERK VDSLREAACN YKRPKNLGNE ILSFKDNPKD SLTQALQRIQ SLQDRLEESV NNTEKMRDST 301: GKRYKDFQIP WEWMLDTGLI GQLKYSSLRL AQEYMKRIAK ELESNGSGKE GNLMLQGVRF AYTIHQFAGG FDGETLSIFH ELKKITTGET RG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)