AT1G06750.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G30630.1); Has 186 Blast hits to 185 proteins in 43 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 3; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:2073882..2076350 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59095.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.23 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQREYSGNRT STYSQILVVS SIGLMIAAAV HYRLRRLRDT KIIPRLKSSH KHKGHEKLER FSHYVARQMG FKDRRECPNL CKLAAEYISK SECCEEDIYS 101: FFSEEPDADT LFIKLVEEFE RCILSYFAFH WSHADLMITQ VLSADAEPKR KLKQIVMAAT RELRIKRVTK NLKVARVFNT LVEEMRAMGL ASVDDSQCTE 201: VMAPVAHKDR SPVLLLMGGG MGAGKSTVLK DILKEAFWAG ADSVVIEADA FKESDVIYRA LSSRGHVDMI QTAELVHQSS TDAASSLLVT ALNEGRDVIM 301: DGTLSWVPFV VQTITMARNV HRHHYRMGAG YKVGDDGVIT ENYWERIGER QQIQEDGRRR KPYRIELVGV VCDAYLAVIR GIRRAIMCRR AVRVRSQLRS 401: HKRFAEAFPT YCSLVDNARL YCTNALEGSP KLIGWKEKEK TLLVDTEEID CLKRVGGLNE NAGSIYELYR QPNPACEAGS IWKDIVLSPS RFSIQQELKY 501: SIQKVEKRSK QHLINNTKS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)