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AT1G06140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1); Has 38916 Blast hits to 13813 proteins in 232 species: Archae - 0; Bacteria - 13; Metazoa - 106; Fungi - 93; Plants - 38173; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC024174EMBL:CP002684
EnsemblPlants:AT1G06140EnsemblPlants:AT1G06140.1entrez:837123Gene3D:1.25.40.10
GeneID:837123Genevisible:Q9LND4GO:GO:0005739GO:GO:0080156
Gramene:AT1G06140.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF638HOGENOM:HOG000237569
InParanoid:Q9LND4InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G06140
OMA:IEMDAVNPaxDb:Q9LND4Pfam:PF01535Pfam:PF13041
Pfam:Q9LND4Pfscan:PS51375PhylomeDB:Q9LND4PIR:G86196
PRIDE:Q9LND4PRO:PR:Q9LND4PROSITE:PS51375ProteinModelPortal:Q9LND4
Proteomes:UP000006548RefSeq:NP_172104.1SMR:Q9LND4STRING:3702.AT1G06140.1
TAIR:AT1G06140TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51500
UniProt:Q9LND4
Coordinates (TAIR10) chr1:+:1864796..1866472
Molecular Weight (calculated) 62382.10 Da
IEP (calculated) 8.14
GRAVY (calculated) 0.04
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPVNRARAL LTILSQAKTL NHTQQVHAKV IIHGFEDEVV LGSSLTNAYI QSNRLDFATS SFNRIPCWKR NRHSWNTILS GYSKSKTCCY SDVLLLYNRM
101: RRHCDGVDSF NLVFAIKACV GLGLLENGIL IHGLAMKNGL DKDDYVAPSL VEMYAQLGTM ESAQKVFDEI PVRNSVLWGV LMKGYLKYSK DPEVFRLFCL
201: MRDTGLALDA LTLICLVKAC GNVFAGKVGK CVHGVSIRRS FIDQSDYLQA SIIDMYVKCR LLDNARKLFE TSVDRNVVMW TTLISGFAKC ERAVEAFDLF
301: RQMLRESILP NQCTLAAILV SCSSLGSLRH GKSVHGYMIR NGIEMDAVNF TSFIDMYARC GNIQMARTVF DMMPERNVIS WSSMINAFGI NGLFEEALDC
401: FHKMKSQNVV PNSVTFVSLL SACSHSGNVK EGWKQFESMT RDYGVVPEEE HYACMVDLLG RAGEIGEAKS FIDNMPVKPM ASAWGALLSA CRIHKEVDLA
501: GEIAEKLLSM EPEKSSVYVL LSNIYADAGM WEMVNCVRRK MGIKGYRKHV GQSATEVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)