AT1G05790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.836 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lipase class 3 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G42450.1); Has 496 Blast hits to 490 proteins in 107 species: Archae - 0; Bacteria - 1; Metazoa - 175; Fungi - 34; Plants - 194; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1733039..1737365 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76950.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 687 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWISRLKRVR RTIMVLGVAN FVVIVSGCVL TLVSDADCDS PGQLFPLFAV CFAAGVKLAA MVKVGTTQEL MAMTIMDSPT QNNHQRKLKY KTWLWWTRFA 101: MVITVLQFIG ATYLLFRLAK YVSRDGLPRN CVLGLSPDTG GWKQTLQVTF LITVCFVALA QCFTGSDILQ WRGVIEEDEV CSVARLLGDL VSYRASGTGH 201: LEFLAGLALL QSNSQFPESY EDCMEAPAFH LQEAAMLHKF AEAAYTGPLL DVGRNPALFL CTWICRQGIL TPWSRKWRPK LDGDNWWRGH AAAFLKFINF 301: PAHVLRRGRI CREKCKATYF VVVLHYLRCV VIAVRGTETA EDLITDGLGR ACSLTVEDLD GLTNHVHGMD TSRKHYGHSG IVEAARDLFM QIEGDPKSGE 401: SESSGFLSSL IGDGCECDGY SIRIVGHSLG GAIASLLGIR LRCRFPNLYV YAYGPLPCVD SDVAEACSEF VTSIVLDNEF SSRLSYGSIR RLQVAAIKVL 501: SQDPKADTAL IFRLARRFLS ASKRQRENVE EKTSEEAIDV NNSPESQHDQ IYPIWEEAEA EMQQDSEEFI NPFHGMASED NPVSQFMETG PTKEDDDEAP 601: EMFMPGLVIH IVPEGNNMSV PIWRGWPICD VTDGYKAYVA NRESFKEIMV SPSMFLDHLP WRCRHALQKV LESRNLFFDL TSETDIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)