AT1G05610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ADP-glucose pyrophosphorylase small subunit 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ADP-glucose pyrophosphorylase small subunit 2 (APS2); FUNCTIONS IN: transferase activity, glucose-1-phosphate adenylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase 1 (TAIR:AT5G48300.1); Has 7131 Blast hits to 7129 proteins in 1626 species: Archae - 269; Bacteria - 4720; Metazoa - 15; Fungi - 23; Plants - 1553; Viruses - 0; Other Eukaryotes - 551 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1673895..1675934 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53338.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQISSSSFIT KFTNLHMVRS TSDHHQWRHN YNLKQLFIPN LSVSNSQHLP LNQSVAAIVF GGGSDSELYP LTKTRSKGAI PIAANYRLID AVISNCINSG 101: ITKIYAITQF NSTSLNSHLS KAYSGFGLGK DRFVEVIAAY QSLEDQGWFQ GTADAIRRCL WVFEEFPVTE FLVLPGHHLY KMDYKMLIED HRRSRADITI 201: VGLSSVTDHD FGFGFMEVDS TNAVTRFTIK GQQDLISVAN RTATRSDGTS SCSVPSAGIY VIGREQMVKL LRECLIKSKD LASEIIPGAI SEGMKVKAHM 301: FDGYWEDVRS IGAYYRANME SIKSYRFYDR QCPLYTMPRC LPPSSMSVAV ITNSIIGDGC ILDKCVIRGS VVGMRTRIAD EVIVEDSIIV GSDIYEMEED 401: VRRKGKEKKI EIRIGIGEKS RIRRAIVDKN ARIGKNVMII NRDNVEEGNR EAQGYVIREG IIIILRNAVI PNDSIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)